Ganny, I love ya but you'd be a pretty terrible choice for recurring/standard villain. Ganondorf's the kind of guy who's meant to be the final boss, the guy at the end rather than the guy who gets thwarted every week. He needs to be a threat.
For a more "regular" villain I'd probably dip into some of his followers and other lower-tier villains. We haven't seen Vaati in a while but since he at least had final-boss status before he's more of a choice for an arc-villain same with Zant who, despite not being a final boss, was still extremely prominent. Some of the others might be a bit too obscure but I think I found an absolutely perfect candidate:
They're both followers of Ganondorf, shown as plenty capable of acting on their own accord (basically being the big bads of the Oracles games) and heavily implied in their appearances to be second only to Ganondorf but they don't have their own seperate goals like Zant did. They also seemed to be behind creating certain minions of Ganondorf (namely the Iron Knuckles) and brainwashing the Gerudo. Most of all:
They can be played for laughs. They don't really carry the same feeling of gravity that Zant and Vaati had, one could totally buy them wasting every week sending monsters after people or whatever. Basically they can be practically reduced to a joke without really becoming an insult unlike the others. Perhaps have Veran and Onox work under them as they did in the games to mix stuff up a bit?