I'm far from an expert on the field but I still had at least some higher level education in biology... and I never heard of a virus enhancing its host. Please enlighten me, give me some examples for this theory. Currently the only way a virus "enhances" someone I can think of is that helps your immune system by either just being there, so it has something to attack (and keep being trained) or that there are some freaking side effects that block other infections - but I'd count neither cases as real enhancements. If there were no infection at all the person would be better off.
You are giving viruses too much credit here. There are little more then a hull with some genetic material inside that can reprogramm a cell to multiply it. There is neither intelligence nor agency in it at all. They are just a random product of nature that was super effective (but not too effective) in what it was doing, so it kept being around.
And why shouldn't something like this excist? It is only logical for something like this to be here, bacterias can change so freaking fast, that the necessary building blocks will be combined other and other again. Strip the things from a bacteria that are not dna and membrane and tada you've got a proto-virus. Because bacteria already include ways to transfer genes with others.
Humans have for a reason a dislike for the uncanny. One of the easiest and natural ways to avoid infection is to simply keep away from infected people as much as possible.
If there were no infections at all, no complex life would exist.
There are plants that are infected with microorganisms; these microorganisms are infected with viruses. Remove the viruses, and the plants lose their ability to thrive in extremophile conditions, and so the plants die. There are humans viruses which increase your chances of cancers as illnesses, but there are also human viruses which decrease your chance of cancer and other illnesses. A lot of non-protein encoding "junk DNA" in the human body is actually viral DNA which gives us all sorts of benefits we are just now starting to comprehend. This is just the tip of the iceberg. And like you said, infectious diseases keep the immune system trained. If your raised animals or people in sterile environments, they are always very unhealthy and end up suffering a lot and dying early. They can't think properly and they can't digest food properly and they behave abnormally. If you dissect them, their organs are abnormal and under the microscope their tissue is abnormal and sickly.
If anything, I am giving viruses and infectious disease far too little credit. I do realize I am attacking every biologist when I say infectious disease and viruses, and not the environment, is the driving force of evolution, but biologists deserve to have their world turned upside down as much as any other group of scientists. A lot of people tend to look down on me because I humanize viruses a lot and make extreme claims, like that the cosmos itself is a living organism. I actually encourage people to mock me by making intentionally outlandish, but not impossible, claims that will attract backlash.
Like you said, viruses are a protein shell with a strand of genetic information inside. But they do much more than just reprogram a cell to make more virus, and they can be manipulated into doing whatever you want. Why should scientists spend so much time and effort designing nanobots, when we already have them? Biologists have learned more about the workings of life studying viruses than anything else. Viruses rely on chance to get from one location to another; they are innate, passive particles that do nothing unless they happen to get lucky. However, the virus is alive once it infects a cell. An infected human cell is not a human cell; it is a living virus. Because the progenitor to the cell nucleus in all our cells was likely an ancient virus that accidentally began to work together with other simple pre-life, we can say humans are living viruses.
There's still a lot of work to be done before we have a better understand of abiogenesis. Scientists cannot randomly create simple life from chemicals. But scientists can mix together chemicals and produce simple viruses and passive chemicals and constructions of 'stuff' which resemble pre-life. Ancient viruses that exist today are far less parasitic than the viruses that exist today; this means that, a long time ago in the past, at least some viruses may have not required life [as we know it] to reproduce.
The difference between bacteria and viruses is that viruses do not need their protective shell to reproduce. All a virus is, is DNA or RNA. You can strip of a virus of its protective shell, and it can still hack cells. Bacteria and other forms of life are very different. If you strip bacteria of everything except its DNA, it can't do anything at all. Viruses, as we thought we knew them, need living cells to reproduce and evolve. All viruses, by definition, are, or were, parasites because they cannot do anything without living cells to infect. However, recent discoveries in biology, which I partly explained here, contradict this. We will soon be forced to redefine "life."
In my opinion, the new definition of
life should be "an element of existence that reproduces and evolves." All the other requirements for life are redundant.
"The rise of the mammals may feel like a familiar tale, but there’s a twist you likely don’t know about: If it wasn’t for a virus, it might not have happened at all."
"Without retroviruses, mammals might never have evolved placentas."
“Viral proteins already have functions. It’s much easier to borrow these than to evolve them from scratch,” says Aris Katzourakis, an evolutionary biologist at the University of Oxford.
"Viruses help turn us from a ball of cells into a fully-formed squalling infant and protect us from pathogens."
http://www.pbs.org/wgbh/nova/next/evolution/endogenous-retroviruses/
There are viruses that help us, viruses that harm us, and viruses that do nothing at all.
The vast majority of viruses that exist do nothing at all or benefit us.
You only know about Ebola, Zika and such because they happen to be the rarest kinds of viruses to exist --- the ones that do harm to humans. However, I am willing to bet my life that even viruses like Ebola and Zika benefit us in ways we have yet to discover.