I agree with the "most puzzles feel like you are breaking them" sentiment, most shrines I do my thought is "pretty sure that was not the intended solution". and sometimes I will attempt the intended solution (or at least what I think is the intended solution) only for the wonky physics to screw everything up.
Here are two examples:
1)There is a shrine with a river at the end, you are expected to make a boat to cross it, simple, except for some reason the boat kept doing a 90 degree turn to the right at roughly the midway point in the river, and I never firgured out why, it didn't have any extra shit on the right side and Link was standing in the middle of the boat but it kept doing it, so I just jumped in the water and swam the rest of the way.
2)A shrine with lava, and bridges, you are intended to attatch the bridge to a mini car they give you and power it up, that way the vehicle builds the bridge for you, but for some reason the car kept getting stuck in the lava, I even watched a youtube video, reloaded a previous save attatched the vehicle in the same manner as the video only for it to get stuck in the lava, wheras the one in the video moved to the other side with no issue, I ended up jumping into the stuck vehicle and then paraglided to the other side.